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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77936962_77938782_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77936962 - 77938782
Intron Length:
1821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTGTCTTAATG
Flanking Amino Acid:
TRYNKDKILQGQGVDEPLSA
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1.1
80.8
31.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
33.6
-1.9
3.1
44.2
43.6
Minor BPS
72.7
0.57
1.4
74.4
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003072
77936493 - 77944673
8181