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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77993641_77994698_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77993641 - 77994698
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCA
5'SS Class:
major
3'SS Sequence:
TGTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTGCTTTCATT
Flanking Amino Acid:
MYSRAAQIPAGIASTYPVL
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.5
34.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.2
0.88
0.7
88.9
28.2
Minor 5ss
42.9
-0.8
2.4
51.4
45
Minor BPS
56.8
0.3
1.9
74.65
43.4

Associated Gene:

Gene:
FGF6
Ensembl Gene ID:
ENSAPLG00000003052
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003084
77990077 - 77994726
4650