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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78018272_78019497_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78018272 - 78019497
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATATAATGAATA
Flanking Amino Acid:
RAELVFKCVKGFMMEMASWD
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.7
34.9
Major BPS
79
0.72
1
78.4
31.2
Major PPT
72.4
0.5
0.9
69.1
41.8
Minor 5ss
45.6
-0.5
2.5
57.3
47.4
Minor BPS
48.3
-0.1
1.8
62.46
36.8

Associated Gene:

Gene:
C12orf4
Ensembl Gene ID:
ENSAPLG00000003055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003130
78016935 - 78039920
22986