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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78024875_78026415_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78024875 - 78026415
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTAATTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
GTTTATGTAATT
Flanking Amino Acid:
IERNQSNILPGEFYITRHSN
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
72.7
0.51
0.9
66.6
40.2
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
53
0.17
2.1
77.31
39.6

Associated Gene:

Gene:
C12orf4
Ensembl Gene ID:
ENSAPLG00000003055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003130
78016935 - 78039920
22986