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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78032515_78033128_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78032515 - 78033128
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTGGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTTAATGATA
Flanking Amino Acid:
LLEESFTIHLGAQLKTMHNL
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71
0.47
1.1
65.2
44.9
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
48.4
-0.1
1.8
64.85
34.9

Associated Gene:

Gene:
C12orf4
Ensembl Gene ID:
ENSAPLG00000003055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003130
78016935 - 78039920
22986