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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78034225_78034622_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78034225 - 78034622
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAGT
5'SS Class:
major
3'SS Sequence:
ATGTTTTATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATG
Flanking Amino Acid:
DLKNPNNSSIRHRCTAKIFG
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76.3
38.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.4
0.55
0.9
70.1
40
Minor 5ss
43.6
-0.7
2.6
60.7
43.6
Minor BPS
78
0.74
1.1
78.3
32.8

Associated Gene:

Gene:
C12orf4
Ensembl Gene ID:
ENSAPLG00000003055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024908
78033951 - 78039901
5951