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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78040786_78042232_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78040786 - 78042232
Intron Length:
1447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TATTTCTTAAAT
Flanking Amino Acid:
VDYSEFGEDDDEDFACIAAP
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
70.2
0.45
1
67.4
37.6
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
79.7
1.01
1.2
90.42
32.6

Associated Gene:

Gene:
RAD51AP1
Ensembl Gene ID:
ENSAPLG00000003097
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003139
78040073 - 78048577
8505