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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78042375_78043158_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78042375 - 78043158
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTACTTAACC
Flanking Amino Acid:
TPFQKQAPSKRISLDDKLYQ
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
79.9
0.92
1.4
85.15
32.4

Associated Gene:

Gene:
RAD51AP1
Ensembl Gene ID:
ENSAPLG00000003097
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003139
78040073 - 78048577
8505