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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78046971_78047856_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78046971 - 78047856
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGTG
5'SS Class:
major
3'SS Sequence:
AAATTATTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAA
Flanking Amino Acid:
TEKKPKWIPPAASGSTNNIG
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
67.3
44.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.1
0.56
1
71
43.4
Minor 5ss
40.8
-1
3.4
57.9
46.7
Minor BPS
66.3
0.51
1.5
75.65
35.9

Associated Gene:

Gene:
RAD51AP1
Ensembl Gene ID:
ENSAPLG00000003097
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003139
78040073 - 78048577
8505