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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78054922_78071811_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
78054922 - 78071811
Intron Length:
16890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCATGTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTATTATTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.2
0.64
0.9
71.3
38.3
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
63.1
0.41
1.7
74.75
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003105
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003149
78054816 - 78096324
41509