Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78083418_78085246_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78083418 - 78085246

Intron Length:

1829

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAAGTGT

5'SS Class:

major

3'SS Sequence:

ACAATCCTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCAAC

U12 Branch Point Sequence:

CTTCTTCCAACC

Flanking Amino Acid:

NHFCISFELLGINLYELIKK

Intron Amino Acid Position:

226

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

63.7

43.1

Major BPS

61.9

0.3

1.2

70.7

33.5

Major PPT

65.8

0.36

0.9

57.7

37.6

Minor 5ss

37.4

-1.4

3.4

46.8

48.5

Minor BPS

46.7

-0.2

1.8

60.18

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003105

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023295

78063822 - 78096324

32503

ENSAPLT00000003149

78054816 - 78096324

41509