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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78107218_78108164_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78107218 - 78108164
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
ACTCTTATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTTCCAATGAAA
Flanking Amino Acid:
TCDSNDLDITMDTARLITAF
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63.6
42.3
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
79.1
0.65
0.9
70.2
39.5
Minor 5ss
33.8
-1.8
3.2
45.2
43.7
Minor BPS
47.7
-0.1
2
68.02
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003116
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003175
78104304 - 78118679
14376