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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78107218_78108830_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78107218 - 78108830
Intron Length:
1613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
GCTTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTTAT
U12 Branch Point Sequence:
GCTTCTTTTACA
Flanking Amino Acid:
TCDSNDLDITFAVPVEETKY
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63.6
42.3
Major BPS
65.9
0.39
1.2
57.6
41.3
Major PPT
85.4
0.8
0.8
79.4
32.6
Minor 5ss
33.8
-1.8
3.2
45.2
43.7
Minor BPS
65.7
0.49
1.6
71.79
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003116
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019383
78104304 - 78118679
14376