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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78108327_78108830_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78108327 - 78108830
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTTAT
U12 Branch Point Sequence:
GCTTCTTTTACA
Flanking Amino Acid:
FFTYDLRLDNFAVPVEETKY
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
65.9
0.39
1.2
57.6
41.3
Major PPT
85.4
0.8
0.8
79.4
32.6
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
65.7
0.49
1.6
71.79
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003116
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003175
78104304 - 78118679
14376