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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78110278_78111251_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78110278 - 78111251
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCCACAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TACTCATTACTT
Flanking Amino Acid:
VVVGWAVGGESYQFPDDAAY
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
63.7
0.31
1.1
62.7
38.2
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
56
0.27
1.9
74.1
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003116
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019383
78104304 - 78118679
14376
ENSAPLT00000003175
78104304 - 78118679
14376