Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78111355_78111686_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78111355 - 78111686

Intron Length:

332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTATTTTAAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTATTTTAAAG

Flanking Amino Acid:

IHYSNFDLVSGLIDSSGVRI

Intron Amino Acid Position:

341

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

83.1

30.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

81.2

0.7

82.5

32.7

Minor 5ss

30.6

-2.2

41.1

45.5

Minor BPS

63.9

0.3

1.5

68.85

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003116

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019383

78104304 - 78118679

14376

ENSAPLT00000003175

78104304 - 78118679

14376