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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78117726_78118439_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78117726 - 78118439
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCATCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATAATTTTATTT
Flanking Amino Acid:
DQIVVIKTINEIQKNESGLI
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.8
38.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.4
0.59
0.8
73.6
30.2
Minor 5ss
37.9
-1.4
2.9
50.8
38.5
Minor BPS
51.5
0.12
1.5
67.2
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003116
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019383
78104304 - 78118679
14376
ENSAPLT00000003175
78104304 - 78118679
14376