Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78124437_78126370_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78124437 - 78126370

Intron Length:

1934

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTCAA

5'SS Class:

strong_major

3'SS Sequence:

TGCCTGCTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCATTAT

U12 Branch Point Sequence:

TTCCCCATTATT

Flanking Amino Acid:

SRLQKDINVQDSTYAELNVQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

74.1

38.3

Major BPS

59.8

0.24

1.2

51.6

42.3

Major PPT

72.6

0.51

0.9

69.4

36.9

Minor 5ss

32.1

-2

3.1

40.2

45.9

Minor BPS

51.9

0.14

1.9

74.69

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016690

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034476

78124238 - 78134217

9980