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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78126440_78129121_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78126440 - 78129121
Intron Length:
2682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAG
U12 Branch Point Sequence:
ATAACCTACATT
Flanking Amino Acid:
TSIIASCASSVPSGQTDITN
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
55.1
0.13
1.5
64.1
39.8
Major PPT
83.5
0.75
0.8
77.1
36.6
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
47.6
-0.1
2.1
67.82
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016690
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034476
78124238 - 78134217
9980