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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78129170_78129775_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78129170 - 78129775
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTTCCTAATCC
Flanking Amino Acid:
DITNFKDSRSGKNCCSRTRI
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
85.5
0.8
0.6
81.7
23.2
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
67.1
0.52
1.9
82.19
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016690
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034476
78124238 - 78134217
9980