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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78129866_78131422_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78129866 - 78131422
Intron Length:
1557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
ATCTTATTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AGTTATTTAAAA
Flanking Amino Acid:
LVIGVGLTLLYHPTTRSSQD
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
70.6
36.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78
0.63
0.9
69.8
40
Minor 5ss
42.5
-0.8
2.7
51.5
44.9
Minor BPS
60.4
0.32
1.6
69.16
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016690
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034476
78124238 - 78134217
9980