Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78131489_78132388_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78131489 - 78132388

Intron Length:

900

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTCCTATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTGAA

U12 Branch Point Sequence:

TTTTCCACATTT

Flanking Amino Acid:

TFSITYDKAQDCPQHWKRNG

Intron Amino Acid Position:

158

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.9

Major BPS

69.4

0.48

1.2

63.4

44.3

Major PPT

78.2

0.63

0.7

25.4

Minor 5ss

-1.6

3.1

50.1

46.4

Minor BPS

53.3

0.18

2.1

81.42

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016690

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034476

78124238 - 78134217

9980