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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78133271_78133839_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78133271 - 78133839
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGCTTA
5'SS Class:
major
3'SS Sequence:
TCTCCCTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
CTAAATCTAACT
Flanking Amino Acid:
WINGKEHSTDIFNITGPHDY
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
77
34.4
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
78.5
0.64
0.9
76.5
32.1
Minor 5ss
49.9
-0
2.8
69
41.9
Minor BPS
48.2
-0
1.9
67.42
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016690
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034476
78124238 - 78134217
9980