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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78134001_78134104_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78134001 - 78134104
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGAACC
5'SS Class:
major
3'SS Sequence:
TCCTTCTGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AAATATCTAATC
Flanking Amino Acid:
AEEEQQTTDSNTLPSLEHSL
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
66.2
38
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
75.2
0.57
0.9
69
37.1
Minor 5ss
35.1
-1.7
3.2
44.7
36.9
Minor BPS
47.7
-0.1
1.7
56.83
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016690
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034476
78124238 - 78134217
9980