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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78156316_78156656_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78156316 - 78156656
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCATGGG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
ERRTAPRKAGGLFSNIWFWR
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
56.6
42.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.5
0.98
0.7
92.4
26.2
Minor 5ss
24.9
-2.9
3.2
31.6
42.7
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003141
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003176
78155671 - 78160912
5242
ENSAPLT00000026609
78155935 - 78161018
5084