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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78157584_78158674_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78157584 - 78158674
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTGTTTATTC
Flanking Amino Acid:
LLVIENLQELSFMVKITKQD
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.9
0.83
0.7
81.8
30.1
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
50.5
-0
2
65.28
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003141
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003176
78155671 - 78160912
5242
ENSAPLT00000036195
78155900 - 78160506
4607
ENSAPLT00000026609
78155935 - 78161018
5084