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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78168472_78169148_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78168472 - 78169148
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GTTCTCTCATCA
Flanking Amino Acid:
LLGDPRVKENRLATSRIGTD
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
82.4
29.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
76.1
0.59
0.9
74.8
34.8
Minor 5ss
33
-1.9
2.7
43.8
43.3
Minor BPS
50.3
0.01
1.8
65.83
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037150
78168339 - 78179739
11401