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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78170160_78171213_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78170160 - 78171213
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TCTCCATCTACA
Flanking Amino Acid:
LMEELCEDGEETCELCPPGW
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
79.7
0.67
0.8
72.9
30.8
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
46.6
-0.2
2.1
62.8
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037150
78168339 - 78179739
11401