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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78171355_78172255_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78171355 - 78172255
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATTTTTATTC
Flanking Amino Acid:
LVTMAVLAKQFLEGRAEKSD
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77
0.61
1
75.9
38.4
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
57
0.2
1.5
64.67
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037150
78168339 - 78179739
11401