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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78193629_78194124_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78193629 - 78194124
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
AGATACTTATGT
Flanking Amino Acid:
WLNDPKHLGHSFTIKGRKKE
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.7
33.5
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
47.6
-0.1
2
65.33
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003142
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029373
78193499 - 78197576
4078
ENSAPLT00000003180
78193499 - 78203097
9599