Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78213558_78217659_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78213558 - 78217659

Intron Length:

4102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTAAGTTCC

5'SS Class:

major

3'SS Sequence:

TGTATTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TATTTATTAATC

Flanking Amino Acid:

WENGTALNMNLFQIQNHSEC

Intron Amino Acid Position:

139

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

70.6

34.1

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

86.9

0.83

0.8

84.7

35.8

Minor 5ss

-0.6

2.7

60.1

38.5

Minor BPS

68.7

0.57

1.5

76.45

33.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022373

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026846

78212837 - 78223668

10832

ENSAPLT00000001218

78213452 - 78223803

10352