Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78220041_78221995_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78220041 - 78221995

Intron Length:

1955

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCCTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTTTGTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

CCAGGTAGAAAT

Flanking Amino Acid:

FLLVMIILFVVLVLQICQRG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

74.5

41.9

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

88.9

0.87

0.6

85.2

22.1

Minor 5ss

43.9

-0.7

3.2

62.5

43.1

Minor BPS

34.8

-1

1.9

43.16

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022373

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026846

78212837 - 78223668

10832

ENSAPLT00000001218

78213452 - 78223803

10352