About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78293570_78293620_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
78293570 - 78293620
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATTTTTC
5'SS Class:
weak_major
3'SS Sequence:
CAATCCACGGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACGGCAATAAAG
Flanking Amino Acid:
GYGFINRLTNYLRSVGDGET
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
69.8
35.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
48.5
-0
1.1
46.5
35
Minor 5ss
61.8
0.4
2.2
74.3
34.8
Minor BPS
40.7
-0.8
2
41.11
42.8

Associated Gene:

Gene:
YBX3
Ensembl Gene ID:
ENSAPLG00000003147
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003228
78283376 - 78301549
18174