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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78293681_78294358_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78293681 - 78294358
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTAAC
U12 Branch Point Sequence:
TGTGGCTTAACT
Flanking Amino Acid:
VEFDVVEGEKGAEAANVTGP
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
59.3
0.23
1.3
63.6
40.3
Major PPT
77.5
0.62
0.8
74.3
36.5
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
67.7
0.63
1.9
84.57
42.1

Associated Gene:

Gene:
YBX3
Ensembl Gene ID:
ENSAPLG00000003147
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003228
78283376 - 78301549
18174