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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78299543_78301204_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
78299543 - 78301204
Intron Length:
1662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGTTATTT
5'SS Class:
weak_major
3'SS Sequence:
TGCCTCTTCAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
TTGTCCTTGATA
Flanking Amino Acid:
PTYRPRYRRFAPPRPRPAPV
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.7
0.04
1
57.8
35
Major BPS
66.4
0.41
1
61.3
37
Major PPT
55.2
0.12
1.7
63.8
36.9
Minor 5ss
47.2
-0.3
3
70.4
41.3
Minor BPS
79.9
0.93
1
82.09
33.1

Associated Gene:

Gene:
YBX3
Ensembl Gene ID:
ENSAPLG00000003147
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003228
78283376 - 78301549
18174