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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78307335_78308366_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78307335 - 78308366
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGGTTTAAAG
Flanking Amino Acid:
KLVEEMEKMTVQATWMAYDM
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
74.2
36.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.6
0.55
1.1
74.5
39.3
Minor 5ss
33.1
-1.9
3.8
49.2
47.3
Minor BPS
52
-0
2
63.96
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017071
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020207
78307159 - 78308475
1317