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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78320555_78322129_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78320555 - 78322129
Intron Length:
1575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTCTTTGTCT
Flanking Amino Acid:
LECNSNDKLCVVREYQTEVI
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77.7
31.2
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
75.7
0.58
0.9
69.8
36.6
Minor 5ss
42.6
-0.8
3.1
56.7
42.1
Minor BPS
53.3
0.19
3.5
90.81
33.2

Associated Gene:

Gene:
STYK1
Ensembl Gene ID:
ENSAPLG00000003189
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003241
78313435 - 78331428
17994