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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78322274_78323238_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78322274 - 78323238
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCATC
5'SS Class:
major
3'SS Sequence:
TTGTTTTTGTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTATGCATCACA
Flanking Amino Acid:
REGSSASEQQVNDRNQQESS
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.2
76.2
39.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.1
0.75
1
84.6
36
Minor 5ss
49.5
-0
2.6
69.3
41.4
Minor BPS
47.6
-0.1
2.4
69.14
42.9

Associated Gene:

Gene:
STYK1
Ensembl Gene ID:
ENSAPLG00000003189
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003241
78313435 - 78331428
17994