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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78323488_78323724_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78323488 - 78323724
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TTGATTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATTTCTTTGATT
Flanking Amino Acid:
TTTVILKALQDLAGLQEVKD
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
83.8
0.76
0.8
81.3
36.2
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
79
1
1
88.92
28.9

Associated Gene:

Gene:
STYK1
Ensembl Gene ID:
ENSAPLG00000003189
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003241
78313435 - 78331428
17994