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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78323907_78328792_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78323907 - 78328792
Intron Length:
4886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGCTCTTTTATC
Flanking Amino Acid:
LLTFLWTCRKDVMTTNGIPY
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.1
0.68
0.8
74
35.4
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
59.7
0.29
1.6
66.72
39.4

Associated Gene:

Gene:
STYK1
Ensembl Gene ID:
ENSAPLG00000003189
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003241
78313435 - 78331428
17994