About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78329339_78329584_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
78329339 - 78329584
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGATTT
5'SS Class:
weak_major
3'SS Sequence:
TCTCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
GGAAACTTAACA
Flanking Amino Acid:
LKKPPSIKADIWSFGILLYE
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
76.3
33.3
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
89
0.88
0.6
84.2
23.7
Minor 5ss
58.4
0.29
2.7
78
36.6
Minor BPS
59.2
0.28
1.6
64.5
40.6

Associated Gene:

Gene:
STYK1
Ensembl Gene ID:
ENSAPLG00000003189
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003241
78313435 - 78331428
17994