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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78329626_78329901_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78329626 - 78329901
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TCTACTGTTACT
Flanking Amino Acid:
GILLYEMITLGAPPYPEVPP
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
86
0.81
0.7
77.5
31.2
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
48
-0
2.3
72.29
44.7

Associated Gene:

Gene:
STYK1
Ensembl Gene ID:
ENSAPLG00000003189
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003241
78313435 - 78331428
17994