About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78352014_78353125_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
78352014 - 78353125
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
GGTTTGTTACTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
86.6
0.82
0.7
81
24.1
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
47.7
-0.1
2.2
68.54
42.9

Associated Gene:

Gene:
GABARAPL1
Ensembl Gene ID:
ENSAPLG00000028817
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038598
78351952 - 78358633
6682