Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78353246_78354252_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78353246 - 78354252

Intron Length:

1007

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAAAG

5'SS Class:

major

3'SS Sequence:

TGTTCCTCTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTAAG

U12 Branch Point Sequence:

TATTTCTGCATC

Flanking Amino Acid:

RKYLVPSDLTVGQFYFLIRK

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

1.1

71.6

40.1

Major BPS

61.8

0.29

1.5

69.7

35.5

Major PPT

80.3

0.68

0.8

78.2

30.6

Minor 5ss

38.4

-1.3

2.9

48.5

47.2

Minor BPS

0.04

1.9

67.88

37.9

Associated Gene:

Gene:

GABARAPL1

Ensembl Gene ID:

ENSAPLG00000028817

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038598

78351952 - 78358633

6682

ENSAPLT00000031158

78353127 - 78358580

5454

ENSAPLT00000024928

78353127 - 78368121

14995