Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78356992_78358048_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

78356992 - 78358048

Intron Length:

1057

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCC|GTGAGTGTG

5'SS Class:

major

3'SS Sequence:

TTTTTGAGACAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGAG

U12 Branch Point Sequence:

GTTTTTTTGAGA

Flanking Amino Acid:

NPEEIPRQSPRPQRALQVRS

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.6

0.37

1.3

63.5

42.9

Major BPS

72.4

0.56

1.5

71.4

45.1

Major PPT

58.3

0.19

1.2

58.5

45.4

Minor 5ss

32.7

-2

3.3

44.7

43.5

Minor BPS

59.5

0.29

1.6

69.98

36.5

Associated Gene:

Gene:

GABARAPL1

Ensembl Gene ID:

ENSAPLG00000028817

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031158

78353127 - 78358580

5454