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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78365667_78366110_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78365667 - 78366110
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTTAG
5'SS Class:
major
3'SS Sequence:
TCCTCCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
GATGAGGCAAAT
Flanking Amino Acid:
HDSTLQNTITSLHSVFGPAA
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
64.3
38.1
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
81.7
0.71
0.7
72.9
32
Minor 5ss
37
-1.5
2.9
50
46.2
Minor BPS
31.3
-1.3
2.5
48.51
43.6

Associated Gene:

Gene:
TMEM52B
Ensembl Gene ID:
ENSAPLG00000003207
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003256
78365416 - 78366333
918