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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78378501_78378773_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78378501 - 78378773
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
ATTTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTTCACA
Flanking Amino Acid:
WEDGSAFSTDLFQFQETSSR
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.1
35.8
Major BPS
100
1.24
0.5
100
0
Major PPT
88.3
0.86
0.7
84
30.3
Minor 5ss
35.9
-1.6
3.3
53.4
43.8
Minor BPS
64.8
0.46
1.7
76.76
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020238
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032484
78375180 - 78378936
3757