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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7838178_7853447_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7838178 - 7853447
Intron Length:
15270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TAATGCAAAAGA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.3
40.7
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
31.8
-2.1
3
32.6
41.5
Minor BPS
40.6
-0.7
2.4
54.17
44

Associated Gene:

Gene:
SEMA3D
Ensembl Gene ID:
ENSAPLG00000010446
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010992
7837968 - 7952258
114291