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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78389701_78390912_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78389701 - 78390912
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTTG
5'SS Class:
major
3'SS Sequence:
TTCCATTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GAGTTTTTAACA
Flanking Amino Acid:
DTKLSTQRMDWIDLSNEENC
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.5
41.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.8
0.58
0.8
68.9
36.8
Minor 5ss
42.6
-0.8
3.1
54.1
44.6
Minor BPS
68.6
0.58
1.2
68.63
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023747
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018781
78389577 - 78394197
4621