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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78391026_78391571_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78391026 - 78391571
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGATTC
5'SS Class:
major
3'SS Sequence:
GCATTTTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GCATTTTTCATA
Flanking Amino Acid:
LLTLKRKSKLIRMSHILQKQ
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
68.8
37
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
73.1
0.52
0.9
68.3
37.3
Minor 5ss
41.6
-0.9
3.3
55.9
43.8
Minor BPS
48.6
-0.1
1.7
55.58
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023747
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018781
78389577 - 78394197
4621